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Estimate fish length-at-age models using MCMC analysis with 'rstan' models. This package allows a multimodel approach to growth fitting to be applied to length-at-age data and is supported by further analyses to determine model selection and result presentation. The core methods of this package are presented in Smart and Grammer (2021) "Modernising fish and shark growth curves with Bayesian length-at-age models". PLOS ONE 16(2): e0246734 <doi:10.1371/journal.pone.0246734>.
Version: | 1.0.0 |
Depends: | R (≥ 3.4.0) |
Imports: | AquaticLifeHistory, bayesplot, dplyr, ggplot2, loo, methods, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.3.1.1), stats, tibble, tidybayes |
LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
Suggests: | knitr, rmarkdown |
Published: | 2023-11-21 |
DOI: | 10.32614/CRAN.package.BayesGrowth |
Author: | Jonathan Smart [aut, cre, ctb, cph] |
Maintainer: | Jonathan Smart <jonsmartphd at gmail.com> |
BugReports: | https://github.com/jonathansmart/BayesGrowth/issues |
License: | GPL-3 |
URL: | https://github.com/jonathansmart/BayesGrowth |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Citation: | BayesGrowth citation info |
Materials: | README NEWS |
CRAN checks: | BayesGrowth results |
Reference manual: | BayesGrowth.pdf |
Vignettes: |
Estimate growth using MCMC |
Package source: | BayesGrowth_1.0.0.tar.gz |
Windows binaries: | r-devel: BayesGrowth_1.0.0.zip, r-release: BayesGrowth_1.0.0.zip, r-oldrel: BayesGrowth_1.0.0.zip |
macOS binaries: | r-release (arm64): BayesGrowth_1.0.0.tgz, r-oldrel (arm64): BayesGrowth_1.0.0.tgz, r-release (x86_64): BayesGrowth_1.0.0.tgz, r-oldrel (x86_64): BayesGrowth_1.0.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.