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BayesianTools: General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

General-purpose MCMC and SMC samplers, as well as plot and diagnostic functions for Bayesian statistics, with a particular focus on calibrating complex system models. Implemented samplers include various Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential Monte Carlo (SMC) particle filter.

Version: 0.1.8
Depends: R (≥ 3.1.2)
Imports: coda, emulator, mvtnorm, tmvtnorm, IDPmisc, Rcpp (≥ 0.12.12), ellipse, numDeriv, msm, MASS, Matrix, stats, utils, graphics, DHARMa, gap, bridgesampling
LinkingTo: Rcpp
Suggests: DEoptim, lhs, sensitivity, knitr, rmarkdown, roxygen2, testthat
Published: 2023-01-30
DOI: 10.32614/CRAN.package.BayesianTools
Author: Florian Hartig ORCID iD [aut, cre], Francesco Minunno [aut], Stefan Paul [aut], David Cameron [ctb], Tankred Ott [ctb], Maximilian Pichler [ctb]
Maintainer: Florian Hartig <florian.hartig at biologie.uni-regensburg.de>
BugReports: https://github.com/florianhartig/BayesianTools/issues
License: GPL-3
URL: https://github.com/florianhartig/BayesianTools
NeedsCompilation: yes
Materials: NEWS
In views: Bayesian
CRAN checks: BayesianTools results

Documentation:

Reference manual: BayesianTools.pdf
Vignettes: Manual for the BayesianTools R package
Interfacing your model with R

Downloads:

Package source: BayesianTools_0.1.8.tar.gz
Windows binaries: r-devel: BayesianTools_0.1.8.zip, r-release: BayesianTools_0.1.8.zip, r-oldrel: BayesianTools_0.1.8.zip
macOS binaries: r-release (arm64): BayesianTools_0.1.8.tgz, r-oldrel (arm64): BayesianTools_0.1.8.tgz, r-release (x86_64): BayesianTools_0.1.8.tgz, r-oldrel (x86_64): BayesianTools_0.1.8.tgz
Old sources: BayesianTools archive

Reverse dependencies:

Reverse imports: DPTM, eDITH
Reverse suggests: apsimx, ProfoundData, pttstability, r3PG
Reverse enhances: DHARMa

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BayesianTools to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.