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BiodiversityR: Package for Community Ecology and Suitability Analysis

Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.

Version: 2.16-1
Depends: R (≥ 3.2.2), tcltk, vegan (≥ 2.6-4)
Imports: Rcmdr (≥ 2.9-1), ggplot2 (≥ 3.3.3)
Suggests: vegan3d, rgl, permute, lattice, MASS, mgcv, cluster, car, RODBC, rpart, effects, multcomp, ellipse, sp, splancs, spatial, nnet, dismo, raster (≥ 3.6-11), terra (≥ 1.6-47), maxlike, gbm, randomForest, gam (≥ 1.15), earth, mda, kernlab, e1071, glmnet, tools, methods, bootstrap, PresenceAbsence, geosphere, ENMeval, red, igraph, Rlof, maxnet, party, readxl, colorspace, dplyr, rlang, sf, blockCV, envirem (≥ 3.0), concaveman, pvclust
Published: 2024-03-16
DOI: 10.32614/CRAN.package.BiodiversityR
Author: Roeland Kindt ORCID iD [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt at gmail.com>
License: GPL-3
URL: http://www.worldagroforestry.org/output/tree-diversity-analysis
NeedsCompilation: no
Citation: BiodiversityR citation info
Materials: README ChangeLog
In views: Environmetrics
CRAN checks: BiodiversityR results

Documentation:

Reference manual: BiodiversityR.pdf

Downloads:

Package source: BiodiversityR_2.16-1.tar.gz
Windows binaries: r-devel: BiodiversityR_2.16-1.zip, r-release: BiodiversityR_2.16-1.zip, r-oldrel: BiodiversityR_2.16-1.zip
macOS binaries: r-release (arm64): BiodiversityR_2.16-1.tgz, r-oldrel (arm64): BiodiversityR_2.16-1.tgz, r-release (x86_64): BiodiversityR_2.16-1.tgz, r-oldrel (x86_64): BiodiversityR_2.16-1.tgz
Old sources: BiodiversityR archive

Reverse dependencies:

Reverse imports: AlleleShift, knfi
Reverse suggests: goeveg

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BiodiversityR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.