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vegan: Community Ecology Package

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

Version: 2.6-8
Depends: permute (≥ 0.9-0), lattice, R (≥ 4.1.0)
Imports: MASS, cluster, mgcv
Suggests: parallel, tcltk, knitr, markdown
Published: 2024-08-28
DOI: 10.32614/CRAN.package.vegan
Author: Jari Oksanen [aut, cre], Gavin L. Simpson [aut], F. Guillaume Blanchet [aut], Roeland Kindt [aut], Pierre Legendre [aut], Peter R. Minchin [aut], R.B. O'Hara [aut], Peter Solymos [aut], M. Henry H. Stevens [aut], Eduard Szoecs [aut], Helene Wagner [aut], Matt Barbour [aut], Michael Bedward [aut], Ben Bolker [aut], Daniel Borcard [aut], Gustavo Carvalho [aut], Michael Chirico [aut], Miquel De Caceres [aut], Sebastien Durand [aut], Heloisa Beatriz Antoniazi Evangelista [aut], Rich FitzJohn [aut], Michael Friendly [aut], Brendan Furneaux [aut], Geoffrey Hannigan [aut], Mark O. Hill [aut], Leo Lahti [aut], Dan McGlinn [aut], Marie-Helene Ouellette [aut], Eduardo Ribeiro Cunha [aut], Tyler Smith [aut], Adrian Stier [aut], Cajo J.F. Ter Braak [aut], James Weedon [aut]
Maintainer: Jari Oksanen <jhoksane at gmail.com>
BugReports: https://github.com/vegandevs/vegan/issues
License: GPL-2
URL: https://github.com/vegandevs/vegan
NeedsCompilation: yes
Materials: NEWS
In views: Environmetrics, Phylogenetics, Psychometrics, Spatial
CRAN checks: vegan results

Documentation:

Reference manual: vegan.pdf
Vignettes: Design decisions and implementation (source, R code)
Diversity analysis in vegan (source, R code)
Introduction to ordination in vegan (source, R code)
Partition of Variation (source, R code)
vegan FAQ (source, R code)

Downloads:

Package source: vegan_2.6-8.tar.gz
Windows binaries: r-devel: vegan_2.6-8.zip, r-release: vegan_2.6-8.zip, r-oldrel: vegan_2.6-8.zip
macOS binaries: r-release (arm64): vegan_2.6-8.tgz, r-oldrel (arm64): vegan_2.6-8.tgz, r-release (x86_64): vegan_2.6-8.tgz, r-oldrel (x86_64): vegan_2.6-8.tgz
Old sources: vegan archive

Reverse dependencies:

Reverse depends: analogue, BBI, betaper, BiodiversityR, bipartite, blender, cocorresp, CommEcol, diathor, EcoIndR, FD, FreeSortR, ggordiplots, glmm.hp, KnowBR, metacom, MiSPU, mpmcorrelogram, octopucs, ordiBreadth, OTUbase, picante, rareNMtests, rdacca.hp, segRDA, SRS, vegan3d
Reverse imports: abseqR, adegenet, adespatial, aIc, AICcPermanova, AlleleShift, animalcules, aPCoA, Arothron, ausplotsR, barcodetrackR, BAT, bingat, BioTIMEr, CAGEr, canaper, cassandRa, cati, chemodiv, cml, CNVRG, codyn, combi, comsimitv, CoreMicrobiomeR, DarkDiv, dartR, dartR.spatial, dilp, DIscBIO, dispRity, divent, divvy, douconca, dynRB, easyCODA, ecan, ecocbo, ecospat, EcotoneFinder, edmcr, enmpa, entropart, EvaluateCore, evolqg, flowCHIC, flowCyBar, forams, fundiversity, funspace, GABB, gdm, GOCompare, goeveg, GPA, graph4lg, grapherator, GRNNs, GUniFrac, hilldiv, HMP, HTSSIP, HybridMicrobiomes, iCAMP, isopam, knfi, LDM, LinkHD, Linnorm, LorMe, MBECS, mcMST, MEAL, MEclustnet, memgene, metrix, mFD, mia, microbial, microbiome, microbiomeMQC, MicrobiotaProcess, microeco, mirt, mixKernel, mobsim, Momocs, MorphoTools2, NADA2, naturaList, neonPlantEcology, netassoc, netcom, netZooR, NicheBarcoding, node2vec, nodiv, NST, omicplotR, paco, palaeoSig, paleoAM, pathlinkR, PathoStat, patternize, PCPS, pctax, pez, phyloregion, phyloseq, PIUMA, PLSDAbatch, PolicyPortfolios, POMA, PopGenReport, poppr, powerTCR, ProjectionBasedClustering, QFASA, RaceID, recluster, rioja, RPANDA, Rtapas, RTCC, RVAideMemoire, RVenn, seriation, shapeR, SigTree, smacofx, smartsnp, soundecology, spaceNet, SparseLPM, spmoran, SSP, stops, supportR, surveyvoi, SYNCSA, synergyfinder, tapnet, TaxaNorm, Toothnroll, TraMineR, tripr, tspmeta, vcfR, vegclust, visvow, Xplortext, zetadiv
Reverse suggests: abdiv, betapart, biosampleR, bipartiteD3, bluster, curatedMetagenomicData, dimRed, dissCqN, divDyn, ecolottery, ecoregime, ecospace, ecostats, ecotraj, eHOF, enveomics.R, epiphy, GCalignR, glottospace, hagis, HDANOVA, idar, interactiveDisplay, iSEEtree, LegATo, mefa, MetaNet, MGnifyR, miaSim, miaViz, MiRKAT, MiscMetabar, multiWGCNA, ordr, pcutils, permute, phylotools, Platypus, primer, ProcMod, pRoloc, PtH2O2lipids, raptr, ReporterScore, restoptr, Rraven, RRphylo, sads, sharpshootR, shipunov, SoundShape, spaa, SQMtools, tidypaleo, ulrb, vegdata, vegtable, WeightedCluster, yaImpute
Reverse enhances: labdsv

Linking:

Please use the canonical form https://CRAN.R-project.org/package=vegan to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.