The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Aligns peak based on peak retention times and matches homologous peaks across samples. The underlying alignment procedure comprises three sequential steps. (1) Full alignment of samples by linear transformation of retention times to maximise similarity among homologous peaks (2) Partial alignment of peaks within a user-defined retention time window to cluster homologous peaks (3) Merging rows that are likely representing homologous substances (i.e. no sample shows peaks in both rows and the rows have similar retention time means). The algorithm is described in detail in Ottensmann et al., 2018 <doi:10.1371/journal.pone.0198311>.
Version: | 1.0.7 |
Depends: | R (≥ 3.2.5) |
Imports: | ggplot2 (≥ 2.2.1), graphics, stats, readr, reshape2, stringr, utils, pbapply, methods, tibble |
Suggests: | knitr, pander, rmarkdown, testthat, vegan (≥ 2.4.2) |
Published: | 2024-07-03 |
DOI: | 10.32614/CRAN.package.GCalignR |
Author: | Meinolf Ottensmann
|
Maintainer: | Meinolf Ottensmann <meinolf.ottensmann at web.de> |
BugReports: | https://github.com/mottensmann/GCalignR/issues |
License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
URL: | https://github.com/mottensmann/GCalignR |
NeedsCompilation: | no |
Language: | en-GB |
Citation: | GCalignR citation info |
Materials: | README NEWS |
In views: | ChemPhys |
CRAN checks: | GCalignR results |
Reference manual: | GCalignR.pdf |
Vignettes: |
GCalignR: How does the Algorithms work? GCalignR Step by Step |
Package source: | GCalignR_1.0.7.tar.gz |
Windows binaries: | r-devel: GCalignR_1.0.7.zip, r-release: GCalignR_1.0.7.zip, r-oldrel: GCalignR_1.0.7.zip |
macOS binaries: | r-release (arm64): GCalignR_1.0.7.tgz, r-oldrel (arm64): GCalignR_1.0.7.tgz, r-release (x86_64): GCalignR_1.0.7.tgz, r-oldrel (x86_64): GCalignR_1.0.7.tgz |
Old sources: | GCalignR archive |
Please use the canonical form https://CRAN.R-project.org/package=GCalignR to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.