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surveyvoi: Survey Value of Information

Decision support tool for prioritizing sites for ecological surveys based on their potential to improve plans for conserving biodiversity (e.g. plans for establishing protected areas). Given a set of sites that could potentially be acquired for conservation management, it can be used to generate and evaluate plans for surveying additional sites. Specifically, plans for ecological surveys can be generated using various conventional approaches (e.g. maximizing expected species richness, geographic coverage, diversity of sampled environmental algorithms. After generating such survey plans, they can be evaluated using conditions) and maximizing value of information. Please note that several functions depend on the 'Gurobi' optimization software (available from <https://www.gurobi.com>). Additionally, the 'JAGS' software (available from <https://mcmc-jags.sourceforge.io/>) is required to fit hierarchical generalized linear models. For further details, see Hanson et al. (2022) <doi:10.1111/1365-2664.14309>.

Version: 1.0.6
Depends: R (≥ 4.0.0), Matrix, sf (≥ 0.8.0), nloptr (≥ 1.2.2.2)
Imports: utils, methods, stats, parallel, progress (≥ 1.2.2), assertthat (≥ 0.2.0), xgboost (≥ 1.5.2.1), plyr (≥ 1.8.4), withr (≥ 2.1.2), tibble (≥ 2.1.3), scales (≥ 1.0.0), doParallel (≥ 1.0.15), dplyr (≥ 0.8.3), vegan (≥ 2.5-6), RcppAlgos (≥ 2.3.6), groupdata2 (≥ 1.3.0), Rcpp (≥ 0.12.19), Rsymphony (≥ 0.1-31)
LinkingTo: Rcpp (≥ 0.12.19), RcppEigen (≥ 0.3.3.7.0), PoissonBinomial (≥ 1.1.1), nloptr (≥ 1.2.2.2)
Suggests: testthat (≥ 3.1.2), knitr (≥ 1.20), roxygen2 (≥ 6.1.0), rmarkdown (≥ 1.10), tidyr (≥ 1.0.0), ggplot2 (≥ 3.2.1), gridExtra (≥ 2.3), viridis (≥ 0.5.1), PoissonBinomial (≥ 1.1.1), gurobi (≥ 8.1.0), Rmpfr (≥ 0.8-1), runjags (≥ 2.0.4.6)
Published: 2024-02-16
DOI: 10.32614/CRAN.package.surveyvoi
Author: Jeffrey O Hanson ORCID iD [aut, cre], Iadine Chadès ORCID iD [aut], Emma J Hudgins ORCID iD [aut], Joseph R Bennett ORCID iD [aut]
Maintainer: Jeffrey O Hanson <jeffrey.hanson at uqconnect.edu.au>
BugReports: https://github.com/prioritizr/surveyvoi/issues
License: GPL-3
URL: https://prioritizr.github.io/surveyvoi/
NeedsCompilation: yes
SystemRequirements: JAGS (>= 4.3.0) (optional), fftw3 (>= 3.3), gmp (>= 6.2.1), gmpxx (>= 6.2.1), mpfr (>= 3.0.0), autoconf (>= 2.69), automake (>= 1.16.5)
Language: en-US
Citation: surveyvoi citation info
Materials: README NEWS
CRAN checks: surveyvoi results

Documentation:

Reference manual: surveyvoi.pdf
Vignettes: surveyvoi: Survey Value of Information

Downloads:

Package source: surveyvoi_1.0.6.tar.gz
Windows binaries: r-devel: surveyvoi_1.0.6.zip, r-release: surveyvoi_1.0.6.zip, r-oldrel: surveyvoi_1.0.6.zip
macOS binaries: r-release (arm64): surveyvoi_1.0.6.tgz, r-oldrel (arm64): surveyvoi_1.0.6.tgz, r-release (x86_64): surveyvoi_1.0.6.tgz, r-oldrel (x86_64): surveyvoi_1.0.6.tgz
Old sources: surveyvoi archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.