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Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Version: | 2.9.6 |
Depends: | R (≥ 2.15.1), adegenet (≥ 2.0.0) |
Imports: | stats, graphics, grDevices, utils, vegan, ggplot2, ape (≥ 3.1-1), igraph (≥ 1.0.0), methods, ade4, pegas, polysat, dplyr (≥ 0.4), rlang, boot, shiny, magrittr, progressr |
Suggests: | testthat, knitr, rmarkdown, poweRlaw, cowplot |
Published: | 2024-03-15 |
DOI: | 10.32614/CRAN.package.poppr |
Author: | Zhian N. Kamvar [cre, aut], Javier F. Tabima [aut], Sydney E. Everhart [ctb, dtc], Jonah C. Brooks [aut], Stacy A. Krueger-Hadfield [ctb], Erik Sotka [ctb], Brian J. Knaus [ctb], Patrick G. Meirmans [ctb], Frédéric D. Chevalier [ctb], David Folarin [aut], Niklaus J. Grünwald [ths] |
Maintainer: | Zhian N. Kamvar <zkamvar at gmail.com> |
MailingList: | https://groups.google.com/d/forum/poppr |
BugReports: | https://github.com/grunwaldlab/poppr/issues/ |
License: | GPL-2 | GPL-3 |
URL: | https://grunwaldlab.github.io/poppr/, https://github.com/grunwaldlab/poppr/, https://grunwaldlab.github.io/Population_Genetics_in_R/ |
NeedsCompilation: | yes |
Citation: | poppr citation info |
Materials: | README NEWS |
In views: | Agriculture |
CRAN checks: | poppr results |
Reference manual: | poppr.pdf |
Vignettes: |
Algorightms and Equations |
Package source: | poppr_2.9.6.tar.gz |
Windows binaries: | r-devel: poppr_2.9.6.zip, r-release: poppr_2.9.6.zip, r-oldrel: poppr_2.9.6.zip |
macOS binaries: | r-release (arm64): poppr_2.9.6.tgz, r-oldrel (arm64): poppr_2.9.6.tgz, r-release (x86_64): poppr_2.9.6.tgz, r-oldrel (x86_64): poppr_2.9.6.tgz |
Old sources: | poppr archive |
Reverse suggests: | adegenet, AlleleShift, dartR, dartR.base, vcfR |
Please use the canonical form https://CRAN.R-project.org/package=poppr to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.