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Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.
| Version: | 0.7.0 |
| Depends: | igraph, infotheo |
| Imports: | corpcor, huge, vegan |
| Published: | 2022-07-20 |
| DOI: | 10.32614/CRAN.package.netassoc |
| Author: | Benjamin Blonder, Naia Morueta-Holme |
| Maintainer: | Benjamin Blonder <benjamin.blonder at berkeley.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | netassoc results |
| Reference manual: | netassoc.pdf |
| Package source: | netassoc_0.7.0.tar.gz |
| Windows binaries: | r-devel: netassoc_0.7.0.zip, r-release: netassoc_0.7.0.zip, r-oldrel: netassoc_0.7.0.zip |
| macOS binaries: | r-release (arm64): netassoc_0.7.0.tgz, r-oldrel (arm64): netassoc_0.7.0.tgz, r-release (x86_64): netassoc_0.7.0.tgz, r-oldrel (x86_64): netassoc_0.7.0.tgz |
| Old sources: | netassoc archive |
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