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rbiom: Read/Write, Transform, and Summarize 'BIOM' Data
A toolkit for working with Biological Observation Matrix ('BIOM') files.
Features include reading/writing all 'BIOM' formats, rarefaction, alpha
diversity, beta diversity (including 'UniFrac'), summarizing counts by
taxonomic level, and sample subsetting. Standalone functions for
reading, writing, and subsetting phylogenetic trees are also provided.
All CPU intensive operations are encoded in C with multi-thread support.
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
magrittr, methods, plyr, Rcpp, RcppParallel, rjson, rlang, R.utils, slam, openxlsx |
| LinkingTo: |
Rcpp, RcppParallel |
| Suggests: |
ape, reshape2, rhdf5, testthat |
| Published: |
2021-11-05 |
| DOI: |
10.32614/CRAN.package.rbiom |
| Author: |
Daniel P. Smith 
[aut, cre, cph] |
| Maintainer: |
Daniel P. Smith <dansmith at orst.edu> |
| BugReports: |
https://github.com/cmmr/rbiom/issues |
| License: |
AGPL-3 |
| URL: |
https://cmmr.github.io/rbiom/index.html |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| CRAN checks: |
rbiom results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=rbiom
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.