The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.
Version: | 1.0.3 |
Depends: | R (≥ 3.5.0) |
Imports: | magrittr, methods, plyr, Rcpp, RcppParallel, rjson, rlang, R.utils, slam, openxlsx |
LinkingTo: | Rcpp, RcppParallel |
Suggests: | ape, reshape2, rhdf5, testthat |
Published: | 2021-11-05 |
DOI: | 10.32614/CRAN.package.rbiom |
Author: | Daniel P. Smith |
Maintainer: | Daniel P. Smith <dansmith at orst.edu> |
BugReports: | https://github.com/cmmr/rbiom/issues |
License: | AGPL-3 |
URL: | https://cmmr.github.io/rbiom/index.html |
NeedsCompilation: | yes |
Materials: | README NEWS |
CRAN checks: | rbiom results |
Reference manual: | rbiom.pdf |
Package source: | rbiom_1.0.3.tar.gz |
Windows binaries: | r-devel: rbiom_1.0.3.zip, r-release: rbiom_1.0.3.zip, r-oldrel: rbiom_1.0.3.zip |
macOS binaries: | r-release (arm64): rbiom_1.0.3.tgz, r-oldrel (arm64): rbiom_1.0.3.tgz, r-release (x86_64): rbiom_1.0.3.tgz, r-oldrel (x86_64): rbiom_1.0.3.tgz |
Old sources: | rbiom archive |
Please use the canonical form https://CRAN.R-project.org/package=rbiom to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.