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phylospatial: Spatial Phylogenetic Analysis

Conduct various analyses on spatial phylogenetics. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.

Version: 1.0.0
Depends: R (≥ 3.5)
Imports: ape, sf, stats, terra, vegan
Suggests: canaper, furrr, future, testthat (≥ 3.0.0), betapart, knitr, rmarkdown, tmap, magrittr
Published: 2025-01-24
DOI: 10.32614/CRAN.package.phylospatial
Author: Matthew Kling ORCID iD [aut, cre, cph]
Maintainer: Matthew Kling <mattkling at berkeley.edu>
License: MIT + file LICENSE
URL: https://matthewkling.github.io/phylospatial/
NeedsCompilation: no
Materials: README
CRAN checks: phylospatial results

Documentation:

Reference manual: phylospatial.pdf
Vignettes: alpha-diversity (source, R code)
beta-diversity (source, R code)
phylospatial-data (source, R code)
prioritization (source, R code)

Downloads:

Package source: phylospatial_1.0.0.tar.gz
Windows binaries: r-devel: phylospatial_1.0.0.zip, r-release: phylospatial_1.0.0.zip, r-oldrel: phylospatial_1.0.0.zip
macOS binaries: r-release (arm64): phylospatial_1.0.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): phylospatial_1.0.0.tgz, r-oldrel (x86_64): not available

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.