MicrobTiSDA: Microbiome Time-Series Data Analysis

Provides tools specifically designed for analyzing longitudinal microbiome data. This tool integrates seven functional modules, providing a systematic framework for microbiome time-series analysis. For more details on inferences involving interspecies interactions see Fisher (2014) <doi:10.1371/journal.pone.0102451>. Details on this package are also described in an unpublished manuscript.

Version:	0.1.0
Depends:	R (≥ 3.5)
Imports:	caret, cluster, dplyr, ggdendro, ggplot2, ggraph, MASS, mgcv, plyr, pracma, randomForest, reshape2, scales, splines, stats, tibble, tidygraph, tidyr, vegan, visNetwork
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2025-09-22
DOI:	10.32614/CRAN.package.MicrobTiSDA
Author:	Shijia Li [aut, cre]
Maintainer:	Shijia Li <s.li2 at uva.nl>
BugReports:	https://github.com/Lishijiagg/MicrobTiSDA/issues
License:	MIT + file LICENSE
URL:	https://github.com/Lishijiagg/MicrobTiSDA
NeedsCompilation:	no
Materials:	README
CRAN checks:	MicrobTiSDA results

Documentation:

Reference manual:	MicrobTiSDA.html , MicrobTiSDA.pdf
Vignettes:	MicrobTiSDA (source, R code)

Downloads:

Package source:	MicrobTiSDA_0.1.0.tar.gz
Windows binaries:	r-devel: MicrobTiSDA_0.1.0.zip, r-release: MicrobTiSDA_0.1.0.zip, r-oldrel: MicrobTiSDA_0.1.0.zip
macOS binaries:	r-release (arm64): MicrobTiSDA_0.1.0.tgz, r-oldrel (arm64): MicrobTiSDA_0.1.0.tgz, r-release (x86_64): MicrobTiSDA_0.1.0.tgz, r-oldrel (x86_64): MicrobTiSDA_0.1.0.tgz

Linking:

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