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A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
| Version: | 1.10.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | R6, stats, ape, vegan, rlang, data.table, magrittr, dplyr, tibble, scales, grid, ggplot2 (≥ 3.5.0), RColorBrewer, reshape2, igraph (≥ 2.0.0) |
| Suggests: | GUniFrac, MASS, ggpubr, randomForest, ggdendro, ggrepel, agricolae, gridExtra, picante, pheatmap, rgexf, mice, GGally |
| Published: | 2024-10-29 |
| DOI: | 10.32614/CRAN.package.microeco |
| Author: | Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb] |
| Maintainer: | Chi Liu <liuchi0426 at 126.com> |
| License: | GPL-3 |
| URL: | https://github.com/ChiLiubio/microeco |
| NeedsCompilation: | no |
| Citation: | microeco citation info |
| CRAN checks: | microeco results |
| Reference manual: | microeco.pdf |
| Package source: | microeco_1.10.0.tar.gz |
| Windows binaries: | r-devel: microeco_1.10.0.zip, r-release: microeco_1.10.0.zip, r-oldrel: microeco_1.10.0.zip |
| macOS binaries: | r-release (arm64): microeco_1.10.0.tgz, r-oldrel (arm64): microeco_1.10.0.tgz, r-release (x86_64): microeco_1.10.0.tgz, r-oldrel (x86_64): microeco_1.10.0.tgz |
| Old sources: | microeco archive |
| Reverse imports: | file2meco, meconetcomp, mecoturn |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.