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Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) <doi:10.1093/nargab/lqac022>.
Version: | 0.2.5 |
Depends: | R (≥ 3.5.0) |
Imports: | FNN, irlba, numbers, fpc, bluster, igraph, matrixStats, utils |
Suggests: | testthat (≥ 2.1.0), Seurat, SingleCellExperiment, SummarizedExperiment, scater, batchelor, scran, knitr, rmarkdown, patchwork, ggplot2 |
Published: | 2023-12-08 |
DOI: | 10.32614/CRAN.package.Canek |
Author: | Martin Loza [aut, cre], Diego Diez [aut] |
Maintainer: | Martin Loza <martin.loza.lopez at gmail.com> |
BugReports: | https://github.com/MartinLoza/Canek/issues |
License: | MIT + file LICENSE |
URL: | https://martinloza.github.io/Canek/ |
NeedsCompilation: | no |
Citation: | Canek citation info |
Materials: | README NEWS |
CRAN checks: | Canek results |
Reference manual: | Canek.pdf |
Vignettes: |
Run Canek on a toy example |
Package source: | Canek_0.2.5.tar.gz |
Windows binaries: | r-devel: Canek_0.2.5.zip, r-release: Canek_0.2.5.zip, r-oldrel: Canek_0.2.5.zip |
macOS binaries: | r-release (arm64): Canek_0.2.5.tgz, r-oldrel (arm64): Canek_0.2.5.tgz, r-release (x86_64): Canek_0.2.5.tgz, r-oldrel (x86_64): Canek_0.2.5.tgz |
Old sources: | Canek archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.