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CellDEEP: Cell DiffErential Expression by Pooling ('CellDEEP')

Pool cells together before running differentially expression (DE) analysis. Tell 'CellDEEP' how many cells you want to pool together (which shall be determined by the overall cell number of data), then run DE analysis. Cheng et al. (2026) <doi:10.64898/2026.03.09.710522>.

Version:	1.0.1
Depends:	R (≥ 3.5)
Imports:	Seurat
Suggests:	knitr, rmarkdown, testthat (≥ 3.2.3)
Published:	2026-03-29
DOI:	10.32614/CRAN.package.CellDEEP
Author:	Yiyi Cheng [aut, cre]
Maintainer:	Yiyi Cheng <2593244c at student.gla.ac.uk>
License:	GPL (≥ 3)
NeedsCompilation:	no
Materials:	README
CRAN checks:	CellDEEP results

Documentation:

Reference manual:	CellDEEP.html , CellDEEP.pdf
Vignettes:	CellDEEP Quick Start (source, R code)

Downloads:

Package source:	CellDEEP_1.0.1.tar.gz
Windows binaries:	r-devel: CellDEEP_1.0.1.zip, r-release: CellDEEP_1.0.1.zip, r-oldrel: CellDEEP_1.0.1.zip
macOS binaries:	r-release (arm64): CellDEEP_1.0.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): CellDEEP_1.0.1.tgz, r-oldrel (x86_64): CellDEEP_1.0.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CellDEEP to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.