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CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell
Data
Create simplex plots to visualize the similarity between
single-cells and selected clusters in a 1-/2-/3-simplex space.
Velocity information can be added as an additional layer.
See Liu J, Wang Y et al (2023) <doi:10.1101/2023.12.07.570655> for more details.
| Version: |
0.1.1 |
| Depends: |
stats, methods, R (≥ 3.6) |
| Imports: |
ggplot2, Matrix, plot3D, Rcpp, rlang |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
knitr, magick, patchwork, rgl, rmarkdown, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0) |
| Published: |
2023-12-15 |
| DOI: |
10.32614/CRAN.package.CytoSimplex |
| Author: |
Yichen Wang  [aut,
cre],
Jialin Liu [aut],
Joshua Welch [cph] |
| Maintainer: |
Yichen Wang <wayichen at umich.edu> |
| License: |
GPL-3 |
| URL: |
https://welch-lab.github.io/CytoSimplex/,
https://github.com/welch-lab/CytoSimplex |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| CRAN checks: |
CytoSimplex results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=CytoSimplex
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.