EpiEstim: Estimate Time Varying Reproduction Numbers from Epidemic Curves
Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004) <doi:10.1093/aje/kwh255>.
| Version: | 2.2-4 |
| Depends: | R (≥ 2.10) |
| Imports: | coarseDataTools (≥ 0.6-4), stats, graphics, reshape2, ggplot2, gridExtra, fitdistrplus, coda, incidence (≥ 1.7.0), scales, grDevices |
| Suggests: | testthat, utils, vdiffr, covr, knitr, rmarkdown |
| Published: | 2021-01-07 |
| DOI: | 10.32614/CRAN.package.EpiEstim |
| Author: | Anne Cori  [aut,
cre],
Simon Cauchemez [ctb],
Neil M. Ferguson
[ctb],
Christophe Fraser
[ctb],
Elisabeth Dahlqwist
[ctb],
P. Alex Demarsh [ctb],
Thibaut Jombart
[ctb],
Zhian N. Kamvar
[ctb],
Justin Lessler
[ctb],
Shikun Li [ctb],
Jonathan A. Polonsky
[ctb],
Jake Stockwin [ctb],
Robin Thompson
[ctb],
Rolina van Gaalen [ctb] |
| Maintainer: | Anne Cori <a.cori at imperial.ac.uk> |
| BugReports: | https://github.com/mrc-ide/EpiEstim/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/mrc-ide/EpiEstim |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| In views: | Epidemiology |
| CRAN checks: | EpiEstim results |
Documentation:
| Reference manual: | EpiEstim.pdf |
| Vignettes: |
EpiEstim demonstration (source, R code) |
Downloads:
| Package source: | EpiEstim_2.2-4.tar.gz |
| Windows binaries: | r-devel: EpiEstim_2.2-4.zip, r-release: EpiEstim_2.2-4.zip, r-oldrel: EpiEstim_2.2-4.zip |
| macOS binaries: | r-devel (arm64): EpiEstim_2.2-4.tgz, r-release (arm64): EpiEstim_2.2-4.tgz, r-oldrel (arm64): EpiEstim_2.2-4.tgz, r-devel (x86_64): EpiEstim_2.2-4.tgz, r-release (x86_64): EpiEstim_2.2-4.tgz, r-oldrel (x86_64): EpiEstim_2.2-4.tgz |
| Old sources: | EpiEstim archive |
Reverse dependencies:
| Reverse imports: | covid19india, earlyR, EpiLPS, ern |
| Reverse suggests: | covidmx, projections |
Linking:
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