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Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, <doi:10.1214/17-AOAS1026> for more details.
| Version: | 1.0.1 |
| Imports: | Rcpp (≥ 0.12.12), PSCBS |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2018-09-13 |
| DOI: | 10.32614/CRAN.package.EstMix |
| Author: | Xuan You, Yichen Cheng |
| Maintainer: | Xuan You <youxuan90 at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | EstMix results |
| Reference manual: | EstMix.pdf |
| Package source: | EstMix_1.0.1.tar.gz |
| Windows binaries: | r-devel: EstMix_1.0.1.zip, r-release: EstMix_1.0.1.zip, r-oldrel: EstMix_1.0.1.zip |
| macOS binaries: | r-release (arm64): EstMix_1.0.1.tgz, r-oldrel (arm64): EstMix_1.0.1.tgz, r-release (x86_64): EstMix_1.0.1.tgz, r-oldrel (x86_64): EstMix_1.0.1.tgz |
| Old sources: | EstMix archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.