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Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Version: | 0.67.0 |
Depends: | R (≥ 3.2.0) |
Imports: | R.methodsS3 (≥ 1.8.2), R.oo (≥ 1.25.0), R.utils (≥ 2.12.0), R.cache (≥ 0.16.0), matrixStats (≥ 0.62.0), aroma.light (≥ 2.4.0), DNAcopy (≥ 1.42.0), listenv (≥ 0.8.0), future (≥ 1.28.0), parallel, graphics, grDevices, stats, utils |
Suggests: | R.rsp (≥ 0.45.0), R.devices (≥ 2.17.1), ggplot2 (≥ 3.2.1) |
Published: | 2024-02-17 |
DOI: | 10.32614/CRAN.package.PSCBS |
Author: | Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut], Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from Hmisc::wtd.quantile()) |
Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
BugReports: | https://github.com/HenrikBengtsson/PSCBS/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | https://github.com/HenrikBengtsson/PSCBS |
NeedsCompilation: | no |
Citation: | PSCBS citation info |
Materials: | README NEWS |
In views: | Omics |
CRAN checks: | PSCBS results |
Reference manual: | PSCBS.pdf |
Vignettes: |
Total copy-number segmentation using CBS Parent-specific copy-number segmentation using Paired PSCBS |
Package source: | PSCBS_0.67.0.tar.gz |
Windows binaries: | r-devel: PSCBS_0.67.0.zip, r-release: PSCBS_0.67.0.zip, r-oldrel: PSCBS_0.67.0.zip |
macOS binaries: | r-release (arm64): PSCBS_0.67.0.tgz, r-oldrel (arm64): PSCBS_0.67.0.tgz, r-release (x86_64): PSCBS_0.67.0.tgz, r-oldrel (x86_64): PSCBS_0.67.0.tgz |
Old sources: | PSCBS archive |
Reverse imports: | aroma.cn, aroma.core, cfdnakit, EstMix |
Reverse suggests: | jointseg, PureCN |
Please use the canonical form https://CRAN.R-project.org/package=PSCBS to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.