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Methods for analyzing DNA copy-number data. Specifically, this package implements the multi-source copy-number normalization (MSCN) method for normalizing copy-number data obtained on various platforms and technologies. It also implements the TumorBoost method for normalizing paired tumor-normal SNP data.
| Version: | 1.7.1 |
| Depends: | R (≥ 3.1.2), R.utils (≥ 2.11.0), aroma.core (≥ 3.2.2) |
| Imports: | R.methodsS3 (≥ 1.8.1), R.oo (≥ 1.24.0), R.filesets (≥ 2.14.0), R.cache (≥ 0.15.0), matrixStats (≥ 0.61.0), PSCBS (≥ 0.65.0), future.apply |
| Suggests: | aroma.light (≥ 2.2.1), DNAcopy (≥ 1.40.0), GLAD (≥ 1.12.0) |
| Published: | 2024-02-17 |
| DOI: | 10.32614/CRAN.package.aroma.cn |
| Author: | Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut] |
| Maintainer: | Henrik Bengtsson <henrikb at braju.com> |
| BugReports: | https://github.com/HenrikBengtsson/aroma.cn/issues |
| License: | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: | https://www.aroma-project.org/, https://github.com/HenrikBengtsson/aroma.cn |
| NeedsCompilation: | no |
| Citation: | aroma.cn citation info |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | aroma.cn results |
| Reference manual: | aroma.cn.pdf |
| Package source: | aroma.cn_1.7.1.tar.gz |
| Windows binaries: | r-devel: aroma.cn_1.7.1.zip, r-release: aroma.cn_1.7.1.zip, r-oldrel: aroma.cn_1.7.1.zip |
| macOS binaries: | r-release (arm64): aroma.cn_1.7.1.tgz, r-oldrel (arm64): aroma.cn_1.7.1.tgz, r-release (x86_64): aroma.cn_1.7.1.tgz, r-oldrel (x86_64): aroma.cn_1.7.1.tgz |
| Old sources: | aroma.cn archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.