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GRIN2: Genomic Random Interval (GRIN)
Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) <doi:10.1093/bioinformatics/btt372>.
| Version: |
1.0 |
| Depends: |
R (≥ 4.2.0) |
| Imports: |
biomaRt, circlize, ComplexHeatmap, data.table, dplyr, EnsDb.Hsapiens.v75, ensembldb, forcats, GenomeInfoDb, ggplot2, graphics, grDevices, grid, gridGraphics, Gviz, magrittr, stats, stringr, survival, tibble, tidyselect, utils, writexl |
| Suggests: |
knitr, rmarkdown |
| Published: |
2024-11-19 |
| DOI: |
10.32614/CRAN.package.GRIN2 |
| Author: |
Abdelrahman Elsayed
 [aut, cre,
cph],
Xueyuan Cao [aut],
Lakshmi Anuhya patibandla [aut],
Stanley Pounds [aut, cph] |
| Maintainer: |
Abdelrahman Elsayed <aelsayed at stjude.org> |
| BugReports: |
https://github.com/abdel-elsayed87/GRIN2/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/abdel-elsayed87/GRIN2 |
| NeedsCompilation: |
no |
| CRAN checks: |
GRIN2 results |
Documentation:
Downloads:
| Package source: |
GRIN2_1.0.tar.gz |
| Windows binaries: |
r-devel: GRIN2_1.0.zip, r-release: not available, r-oldrel: not available |
| macOS binaries: |
r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=GRIN2
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.