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Performing the different steps of gene set enrichment meta-analysis. It provides different functions that allow the application of meta-analysis based on the combination of effect sizes from different pathways in different studies to obtain significant pathways that are common to all of them.
| Version: | 0.99.3 |
| Depends: | R (≥ 4.4) |
| Imports: | Biobase, limma, Rdpack, singscore, GSVA, progress, pbapply, doParallel, parallel, BiocParallel, metafor, RColorBrewer, pheatmap, methods, scales, plyr, grDevices, stats, impute |
| Suggests: | BiocStyle, qpdf, BiocGenerics, RUnit, knitr, rmarkdown |
| Published: | 2024-10-14 |
| DOI: | 10.32614/CRAN.package.GSEMA |
| Author: | Juan Antonio Villatoro-García [aut, cre], Pablo Jurado-Bascón [aut], Pedro Carmona-Sáez [aut] |
| Maintainer: | Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| In views: | MetaAnalysis |
| CRAN checks: | GSEMA results |
| Reference manual: | GSEMA.pdf |
| Vignettes: |
Gene Set Enrichment Meta-Analysis with GSEMA package (source, R code) |
| Package source: | GSEMA_0.99.3.tar.gz |
| Windows binaries: | r-devel: GSEMA_0.99.3.zip, r-release: GSEMA_0.99.3.zip, r-oldrel: not available |
| macOS binaries: | r-release (arm64): GSEMA_0.99.3.tgz, r-oldrel (arm64): not available, r-release (x86_64): GSEMA_0.99.3.tgz, r-oldrel (x86_64): not available |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.