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GeRnika: Simulation, Visualization and Comparison of Tumor Evolution Data

Simulating, visualizing and comparing tumor clonal data by using simple commands. This aims at providing a tool to help researchers to easily simulate tumor data and analyze the results of their approaches for studying the composition and the evolutionary history of tumors.

Version: 1.0.0
Depends: R (≥ 4.00)
Imports: data.tree, purrr, reshape2, DiagrammeR, colorspace, dplyr, methods, vctrs, magrittr, stats
Suggests: knitr, rmarkdown, knitcitations, ggpubr, ggplot2
Published: 2024-09-04
DOI: 10.32614/CRAN.package.GeRnika
Author: Aitor Sánchez-Ferrera ORCID iD [cre, aut], Maitena Tellaetxe-Abete ORCID iD [aut], Borja Calvo ORCID iD [aut]
Maintainer: Aitor Sánchez-Ferrera <aitor.sanchezf at ehu.eus>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README
CRAN checks: GeRnika results

Documentation:

Reference manual: GeRnika.pdf
Vignettes: GeRnika models (source, R code)
Usage of GeRnika (source, R code)

Downloads:

Package source: GeRnika_1.0.0.tar.gz
Windows binaries: r-devel: GeRnika_1.0.0.zip, r-release: GeRnika_1.0.0.zip, r-oldrel: GeRnika_1.0.0.zip
macOS binaries: r-release (arm64): GeRnika_1.0.0.tgz, r-oldrel (arm64): GeRnika_1.0.0.tgz, r-release (x86_64): GeRnika_1.0.0.tgz, r-oldrel (x86_64): GeRnika_1.0.0.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.