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GrabSVG: Granularity-Based Spatially Variable Genes Identifications

Identifying spatially variable genes is critical in linking molecular cell functions with tissue phenotypes. This package implemented a granularity-based dimension-agnostic tool for the identification of spatially variable genes. The detailed description of this method is available at Wang, J. and Li, J. et al. 2023 (Wang, J. and Li, J. (2023), <doi:10.1038/s41467-023-43256-5>).

Version: 0.0.2
Imports: Matrix, sparseMatrixStats, fitdistrplus, RANN, spam
Suggests: knitr, rmarkdown
Published: 2023-12-06
DOI: 10.32614/CRAN.package.GrabSVG
Author: Jinpu Li ORCID iD [aut, cre]
Maintainer: Jinpu Li <castle.lee.f at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: GrabSVG results

Documentation:

Reference manual: GrabSVG.pdf

Downloads:

Package source: GrabSVG_0.0.2.tar.gz
Windows binaries: r-devel: GrabSVG_0.0.2.zip, r-release: GrabSVG_0.0.2.zip, r-oldrel: GrabSVG_0.0.2.zip
macOS binaries: r-release (arm64): GrabSVG_0.0.2.tgz, r-oldrel (arm64): GrabSVG_0.0.2.tgz, r-release (x86_64): GrabSVG_0.0.2.tgz, r-oldrel (x86_64): GrabSVG_0.0.2.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.