The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) <doi:10.1093/nar/gkv007>). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | limma, clusterProfiler, dplyr, org.Mm.eg.db, pheatmap, stringr, stats, utils, grDevices |
| Published: | 2023-09-04 |
| DOI: | 10.32614/CRAN.package.Grouphmap |
| Author: | Yuchen Sun [aut, cre] |
| Maintainer: | Yuchen Sun <yuchensun2436 at 163.com> |
| License: | Artistic-2.0 |
| NeedsCompilation: | no |
| CRAN checks: | Grouphmap results |
| Reference manual: | Grouphmap.pdf |
| Package source: | Grouphmap_1.0.0.tar.gz |
| Windows binaries: | r-devel: Grouphmap_1.0.0.zip, r-release: Grouphmap_1.0.0.zip, r-oldrel: Grouphmap_1.0.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): Grouphmap_1.0.0.tgz, r-release (x86_64): Grouphmap_1.0.0.tgz, r-oldrel (x86_64): not available |
Please use the canonical form https://CRAN.R-project.org/package=Grouphmap to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.