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HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX)
Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.
| Version: |
1.2.4 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
fastglm, caret, parallel, methods, stats, glmnet, tune, recipes |
| Suggests: |
knitr, rmarkdown |
| Published: |
2024-02-09 |
| DOI: |
10.32614/CRAN.package.HTRX |
| Author: |
Yaoling Yang 
[aut, cre],
Daniel Lawson
[aut] |
| Maintainer: |
Yaoling Yang <yaoling.yang at bristol.ac.uk> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
HTRX results |
Documentation:
Downloads:
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.