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HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX)

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Version: 1.2.4
Depends: R (≥ 4.0.0)
Imports: fastglm, caret, parallel, methods, stats, glmnet, tune, recipes
Suggests: knitr, rmarkdown
Published: 2024-02-09
DOI: 10.32614/CRAN.package.HTRX
Author: Yaoling Yang ORCID iD [aut, cre], Daniel Lawson ORCID iD [aut]
Maintainer: Yaoling Yang <yaoling.yang at bristol.ac.uk>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: HTRX results

Documentation:

Reference manual: HTRX.pdf
Vignettes: HTRX_vignette

Downloads:

Package source: HTRX_1.2.4.tar.gz
Windows binaries: r-devel: HTRX_1.2.4.zip, r-release: HTRX_1.2.4.zip, r-oldrel: HTRX_1.2.4.zip
macOS binaries: r-release (arm64): HTRX_1.2.4.tgz, r-oldrel (arm64): HTRX_1.2.4.tgz, r-release (x86_64): HTRX_1.2.4.tgz, r-oldrel (x86_64): HTRX_1.2.4.tgz
Old sources: HTRX archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=HTRX to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.