ImprintCapASM: Allele-Specific Methylation Analysis for Imprinted DMR Diagnostics

Provides functions for SNP-phased allele-specific methylation (ASM) analysis across the 41 canonical human imprinted differentially methylated regions (DMRs). Reads are assigned to REF or ALT alleles based on bisulfite-aware SNP detection, enabling diagnosis of imprinting disorders from whole-genome bisulfite sequencing data. <https://github.com/19-saha/ImprintCapASM>.

Version:	0.1.1
Imports:	data.table, readxl, writexl, vcfR, ggplot2, Rsamtools, tools
Suggests:	testthat (≥ 3.0.0), knitr, rmarkdown
Published:	2026-06-30
DOI:	10.32614/CRAN.package.ImprintCapASM
Author:	Subham Saha [aut, cre, cph], Francesco Cecere [aut], Frederic Brioude [aut, fnd]
Maintainer:	Subham Saha <saha_19 at outlook.com>
BugReports:	https://github.com/19-saha/ImprintCapASM/issues
License:	MIT + file LICENSE
URL:	https://github.com/19-saha/ImprintCapASM
NeedsCompilation:	no
SystemRequirements:	samtools (>= 1.10)
Materials:	README
CRAN checks:	ImprintCapASM results

Documentation:

Reference manual:	ImprintCapASM.html , ImprintCapASM.pdf
Vignettes:	ImprintCapASM-workflow (source, R code)

Downloads:

Package source:	ImprintCapASM_0.1.1.tar.gz
Windows binaries:	r-devel: ImprintCapASM_0.1.1.zip, r-release: ImprintCapASM_0.1.1.zip, r-oldrel: ImprintCapASM_0.1.1.zip
macOS binaries:	r-release (arm64): ImprintCapASM_0.1.1.tgz, r-oldrel (arm64): ImprintCapASM_0.1.1.tgz, r-release (x86_64): ImprintCapASM_0.1.1.tgz, r-oldrel (x86_64): ImprintCapASM_0.1.1.tgz

Linking:

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