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MEGENA: Multiscale Clustering of Geometrical Network

Co-Expression Network Analysis by adopting network embedding technique. Song W.-M., Zhang B. (2015) Multiscale Embedded Gene Co-expression Network Analysis. PLoS Comput Biol 11(11): e1004574. <doi:10.1371/journal.pcbi.1004574>.

Version: 1.3.7
Depends: R (≥ 3.4.0), doParallel (≥ 1.0.11), foreach (≥ 1.4.4), igraph (≥ 1.2.1)
Imports: Rcpp (≥ 0.11.3), Matrix (≥ 1.1-5), ggplot2 (≥ 1.0.0), reshape (≥ 0.8.5), fpc (≥ 2.1-11), cluster (≥ 2.0.7-1), ggrepel (≥ 0.5), ggraph (≥ 1.0.1)
LinkingTo: Rcpp, BH
Suggests: knitr, rmarkdown
Published: 2018-09-10
DOI: 10.32614/CRAN.package.MEGENA
Author: Won-Min Song, Bin Zhang
Maintainer: Won-Min Song <wonmin1984 at gmail.com>
License: GPL (≥ 3)
URL: https://github.com/songw01/MEGENA
NeedsCompilation: yes
Materials: README
CRAN checks: MEGENA results

Documentation:

Reference manual: MEGENA.pdf
Vignettes: MEGENA pipeline overview

Downloads:

Package source: MEGENA_1.3.7.tar.gz
Windows binaries: r-devel: MEGENA_1.3.7.zip, r-release: MEGENA_1.3.7.zip, r-oldrel: MEGENA_1.3.7.zip
macOS binaries: r-release (arm64): MEGENA_1.3.7.tgz, r-oldrel (arm64): MEGENA_1.3.7.tgz, r-release (x86_64): MEGENA_1.3.7.tgz, r-oldrel (x86_64): MEGENA_1.3.7.tgz
Old sources: MEGENA archive

Reverse dependencies:

Reverse imports: DDPNA

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MEGENA to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.