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MKomics: Omics Data Analysis
Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007> ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).
| Version: |
0.7 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma, grid, circlize, ComplexHeatmap |
| Suggests: |
knitr, rmarkdown |
| Published: |
2021-08-08 |
| DOI: |
10.32614/CRAN.package.MKomics |
| Author: |
Matthias Kohl 
[aut, cre] |
| Maintainer: |
Matthias Kohl <Matthias.Kohl at stamats.de> |
| License: |
LGPL-3 |
| URL: |
https://www.stamats.de/ |
| NeedsCompilation: |
no |
| Citation: |
MKomics citation info |
| Materials: |
NEWS |
| CRAN checks: |
MKomics results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
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https://CRAN.R-project.org/package=MKomics
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.