MUGS: Multisource Graph Synthesis with EHR Data

We develop Multi-source Graph Synthesis (MUGS), an algorithm designed to create embeddings for pediatric Electronic Health Record (EHR) codes by leveraging graphical information from three distinct sources: (1) pediatric EHR data, (2) EHR data from the general patient population, and (3) existing hierarchical medical ontology knowledge shared across different patient populations. See Li et al. (2024) <doi:10.1038/s41746-024-01320-4> for details.

Version:	0.1.0
Depends:	R (≥ 3.5.0)
Imports:	MASS, Matrix, fastDummies, doSNOW, dplyr, grplasso, foreach, glmnet, grpreg, inline, mvtnorm, pROC, parallel, RcppArmadillo, rsvd, methods
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2025-05-19
DOI:	10.32614/CRAN.package.MUGS
Author:	Mengyan Li [cre, aut], Thomas Charlon [ctb] (ORCID: 0000-0001-7497-0470), Xiaoou Li [aut], Tianxi Cai [aut], PARSE LTD [aut], CELEHS Team [aut]
Maintainer:	Mengyan Li <mengyanli at bentley.edu>
License:	GPL-3
URL:	https://github.com/celehs/MUGS, https://celehs.github.io/MUGS/, https://doi.org/10.1038/s41746-024-01320-4
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	MUGS results

Documentation:

Reference manual:	MUGS.pdf
Vignettes:	CodeEff_Matrix_usage (source, R code) CodeSiteEff_I2_par_usage (source, R code) DataGen_rare_group_usage (source, R code) Evaluation_sim_usage (source, R code) GroupEff_par_usage (source, R code) get_embed_usage (source, R code) Multisource Graph Synthesis with EHR Data (source, R code)

Downloads:

Package source:	MUGS_0.1.0.tar.gz
Windows binaries:	r-devel: MUGS_0.1.0.zip, r-release: MUGS_0.1.0.zip, r-oldrel: not available
macOS binaries:	r-release (arm64): MUGS_0.1.0.tgz, r-oldrel (arm64): MUGS_0.1.0.tgz, r-release (x86_64): MUGS_0.1.0.tgz, r-oldrel (x86_64): MUGS_0.1.0.tgz

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