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NAM: Nested Association Mapping

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

Version: 1.7.3
Depends: R (≥ 3.2.0)
Imports: Rcpp
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, bWGR
Published: 2019-09-23
DOI: 10.32614/CRAN.package.NAM
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav at gmail.com>
License: GPL-3
NeedsCompilation: yes
Citation: NAM citation info
CRAN checks: NAM results

Documentation:

Reference manual: NAM.pdf
Vignettes: Introduction to NAM
Background for Meta-analysis

Downloads:

Package source: NAM_1.7.3.tar.gz
Windows binaries: r-devel: NAM_1.7.3.zip, r-release: NAM_1.7.3.zip, r-oldrel: NAM_1.7.3.zip
macOS binaries: r-release (arm64): NAM_1.7.3.tgz, r-oldrel (arm64): NAM_1.7.3.tgz, r-release (x86_64): NAM_1.7.3.tgz, r-oldrel (x86_64): NAM_1.7.3.tgz
Old sources: NAM archive

Reverse dependencies:

Reverse imports: SoyNAM
Reverse suggests: MoBPS

Linking:

Please use the canonical form https://CRAN.R-project.org/package=NAM to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.