The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Implementation of the automatic shift detection method for Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.
Version: | 1.7.0 |
Depends: | ape (≥ 5.3), Matrix (≥ 1.2.18), R (≥ 3.6.0) |
Imports: | capushe (≥ 1.1.1), foreach (≥ 1.4.3), gglasso (≥ 1.4), glmnet (≥ 2.0.5), graphics (≥ 3.6.0), grDevices (≥ 3.6.0), LINselect (≥ 1.1.1), MASS (≥ 7.3.45), methods (≥ 3.6.0), plyr (≥ 1.8.4), Rcpp (≥ 1.0.2), robustbase (≥ 0.92.6), stats (≥ 3.6.0), utils (≥ 3.6.0) |
LinkingTo: | Rcpp, RcppArmadillo |
Suggests: | combinat (≥ 0.0.8), doParallel (≥ 1.0.10), phytools (≥ 0.5.38), testthat (≥ 1.0.2), TreeSim (≥ 2.2), knitr, rmarkdown |
Published: | 2024-01-31 |
DOI: | 10.32614/CRAN.package.PhylogeneticEM |
Author: | Paul Bastide [aut, cre], Mahendra Mariadassou [ctb] |
Maintainer: | Paul Bastide <paul.bastide at m4x.org> |
BugReports: | https://github.com/pbastide/PhylogeneticEM/issues |
License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
URL: | https://github.com/pbastide/PhylogeneticEM |
NeedsCompilation: | yes |
Citation: | PhylogeneticEM citation info |
Materials: | NEWS |
CRAN checks: | PhylogeneticEM results |
Reference manual: | PhylogeneticEM.pdf |
Vignettes: |
New World Monkeys Tutorial |
Package source: | PhylogeneticEM_1.7.0.tar.gz |
Windows binaries: | r-devel: PhylogeneticEM_1.7.0.zip, r-release: PhylogeneticEM_1.7.0.zip, r-oldrel: PhylogeneticEM_1.7.0.zip |
macOS binaries: | r-release (arm64): PhylogeneticEM_1.7.0.tgz, r-oldrel (arm64): PhylogeneticEM_1.7.0.tgz, r-release (x86_64): PhylogeneticEM_1.7.0.tgz, r-oldrel (x86_64): PhylogeneticEM_1.7.0.tgz |
Old sources: | PhylogeneticEM archive |
Please use the canonical form https://CRAN.R-project.org/package=PhylogeneticEM to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.