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Visualization platform for T cell receptor repertoire analysis output results. It includes comparison of sequence frequency among samples, network of similar sequences and convergent recombination source between species. Currently repertoire analysis is in early stage of development and requires new approaches for repertoire data examination and assessment as we intend to develop. No publication is available yet (will be available in the near future), Efroni (2021) <https:>.
Version: | 0.0.1 |
Imports: | circlize, grDevices, igraph, reshape2, stringdist, stringi, stringr |
Suggests: | testthat (≥ 3.0.0) |
Published: | 2021-10-25 |
DOI: | 10.32614/CRAN.package.RepertoiR |
Author: | Ido Hasson [aut, cre], Sol Efroni [aut], Hagit Philip [aut], Alona Zilberberg [aut] |
Maintainer: | Ido Hasson <idoh at systemsbiomed.org> |
BugReports: | https://github.com/systemsbiomed/RepertoiR/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/systemsbiomed/RepertoiR |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | RepertoiR results |
Reference manual: | RepertoiR.pdf |
Package source: | RepertoiR_0.0.1.tar.gz |
Windows binaries: | r-devel: RepertoiR_0.0.1.zip, r-release: RepertoiR_0.0.1.zip, r-oldrel: RepertoiR_0.0.1.zip |
macOS binaries: | r-release (arm64): RepertoiR_0.0.1.tgz, r-oldrel (arm64): RepertoiR_0.0.1.tgz, r-release (x86_64): RepertoiR_0.0.1.tgz, r-oldrel (x86_64): RepertoiR_0.0.1.tgz |
Please use the canonical form https://CRAN.R-project.org/package=RepertoiR to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.