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Allows to map species richness and endemism based on stacked species distribution models (SSDM). Individuals SDMs can be created using a single or multiple algorithms (ensemble SDMs). For each species, an SDM can yield a habitat suitability map, a binary map, a between-algorithm variance map, and can assess variable importance, algorithm accuracy, and between- algorithm correlation. Methods to stack individual SDMs include summing individual probabilities and thresholding then summing. Thresholding can be based on a specific evaluation metric or by drawing repeatedly from a Bernoulli distribution. The SSDM package also provides a user-friendly interface.
| Version: | 0.2.9 |
| Depends: | R (≥ 3.2.2) |
| Imports: | sf (≥ 1.0-14), raster (≥ 2.9-5), methods (≥ 3.2.2), mgcv (≥ 1.8.7), earth (≥ 4.4.3), rpart (≥ 4.1.10), gbm (≥ 2.1.1), randomForest (≥ 4.6.10), dismo (≥ 1.0.12), nnet (≥ 7.3.10), e1071 (≥ 1.6.7), ggplot2 (≥ 3.1.1), reshape2 (≥ 1.4.3), scales (≥ 1.0.0), shiny (≥ 0.12.2), shinydashboard (≥ 0.5.1), spThin (≥ 0.1.0), poibin (≥ 1.3.0), foreach (≥ 1.4.4), doParallel (≥ 1.0.14), iterators (≥ 1.0.10), itertools (≥ 0.1-3), parallel (≥ 3.5.2), leaflet (≥ 2.2.0), magrittr (≥ 2.0.3), sdm (≥ 1.1.8) |
| Suggests: | testthat, knitr, rmarkdown, shinyFiles |
| Published: | 2023-10-24 |
| DOI: | 10.32614/CRAN.package.SSDM |
| Author: | Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Florian de Boissieu, Lukas Baumbach, Philippe Birnbaum |
| Maintainer: | Sylvain Schmitt <sylvain.m.schmitt at gmail.com> |
| BugReports: | https://github.com/sylvainschmitt/SSDM/issues |
| License: | GPL (≥ 3) | file LICENSE |
| URL: | https://github.com/sylvainschmitt/SSDM |
| NeedsCompilation: | no |
| Citation: | SSDM citation info |
| Materials: | README NEWS |
| CRAN checks: | SSDM results |
| Reference manual: | SSDM.pdf |
| Vignettes: |
"GUI" SSDM |
| Package source: | SSDM_0.2.9.tar.gz |
| Windows binaries: | r-devel: SSDM_0.2.9.zip, r-release: SSDM_0.2.9.zip, r-oldrel: SSDM_0.2.9.zip |
| macOS binaries: | r-release (arm64): SSDM_0.2.9.tgz, r-oldrel (arm64): SSDM_0.2.9.tgz, r-release (x86_64): SSDM_0.2.9.tgz, r-oldrel (x86_64): SSDM_0.2.9.tgz |
| Old sources: | SSDM archive |
Please use the canonical form https://CRAN.R-project.org/package=SSDM to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.