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A comprehensive toolset for any useR conducting topological data analysis, specifically via the calculation of persistent homology in a Vietoris-Rips complex. The tools this package currently provides can be conveniently split into three main sections: (1) calculating persistent homology; (2) conducting statistical inference on persistent homology calculations; (3) visualizing persistent homology and statistical inference. The published form of TDAstats can be found in Wadhwa et al. (2018) <doi:10.21105/joss.00860>. For a general background on computing persistent homology for topological data analysis, see Otter et al. (2017) <doi:10.1140/epjds/s13688-017-0109-5>. To learn more about how the permutation test is used for nonparametric statistical inference in topological data analysis, read Robinson & Turner (2017) <doi:10.1007/s41468-017-0008-7>. To learn more about how TDAstats calculates persistent homology, you can visit the GitHub repository for Ripser, the software that works behind the scenes at <https://github.com/Ripser/ripser>. This package has been published as Wadhwa et al. (2018) <doi:10.21105/joss.00860>.
| Version: | 0.4.1 |
| Depends: | R (≥ 3.3) |
| Imports: | ggplot2 (≥ 2.2.1), Rcpp (≥ 0.12.15) |
| LinkingTo: | Rcpp |
| Suggests: | testthat (≥ 2.0.0), knitr, rmarkdown, covr |
| Published: | 2019-12-12 |
| DOI: | 10.32614/CRAN.package.TDAstats |
| Author: | Raoul Wadhwa [aut, cre], Andrew Dhawan [aut], Drew Williamson [aut], Jacob Scott [aut], Jason Cory Brunson [ctb], Shota Ochi [ctb] |
| Maintainer: | Raoul Wadhwa <raoulwadhwa at gmail.com> |
| BugReports: | https://github.com/rrrlw/TDAstats/issues |
| License: | GPL-3 |
| URL: | https://github.com/rrrlw/TDAstats |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Citation: | TDAstats citation info |
| CRAN checks: | TDAstats results |
| Reference manual: | TDAstats.pdf |
| Vignettes: |
Hypothesis testing with TDAstats Data Input for TDAstats Introduction to persistent homology with TDAstats |
| Package source: | TDAstats_0.4.1.tar.gz |
| Windows binaries: | r-devel: TDAstats_0.4.1.zip, r-release: TDAstats_0.4.1.zip, r-oldrel: TDAstats_0.4.1.zip |
| macOS binaries: | r-release (arm64): TDAstats_0.4.1.tgz, r-oldrel (arm64): TDAstats_0.4.1.tgz, r-release (x86_64): TDAstats_0.4.1.tgz, r-oldrel (x86_64): TDAstats_0.4.1.tgz |
| Old sources: | TDAstats archive |
| Reverse imports: | lookout, TDAkit |
| Reverse suggests: | TDApplied |
Please use the canonical form https://CRAN.R-project.org/package=TDAstats to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.