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Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | data.table, MASS, TPACData |
| Published: | 2023-10-26 |
| DOI: | 10.32614/CRAN.package.TPAC |
| Author: | H. Robert Frost [aut, cre] |
| Maintainer: | H. Robert Frost <rob.frost at dartmouth.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | TPAC results |
| Reference manual: | TPAC.pdf |
| Vignettes: |
TCGA liver cancer using MSigDB Hallmark collection example |
| Package source: | TPAC_0.2.0.tar.gz |
| Windows binaries: | r-devel: TPAC_0.2.0.zip, r-release: TPAC_0.2.0.zip, r-oldrel: TPAC_0.2.0.zip |
| macOS binaries: | r-release (arm64): TPAC_0.2.0.tgz, r-oldrel (arm64): TPAC_0.2.0.tgz, r-release (x86_64): TPAC_0.2.0.tgz, r-oldrel (x86_64): TPAC_0.2.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.