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TrenchR: Tools for Microclimate and Biophysical Ecology

Tools for translating environmental change into organismal response. Microclimate models to vertically scale weather station data to organismal heights. The biophysical modeling tools include both general models for heat flows and specific models to predict body temperatures for a variety of ectothermic taxa. Additional functions model and temporally partition air and soil temperatures and solar radiation. Utility functions estimate the organismal and environmental parameters needed for biophysical ecology. 'TrenchR' focuses on relatively simple and modular functions so users can create transparent and flexible biophysical models. Many functions are derived from Gates (1980) <doi:10.1007/978-1-4612-6024-0> and Campbell and Norman (1988) <isbn:9780387949376>.

Version: 1.1.1
Depends: R (≥ 3.3.1)
Imports: deSolve, msm, Rdpack (≥ 0.7), stats, zoo
Suggests: covr, knitr, rmarkdown, testthat
Published: 2023-09-13
DOI: 10.32614/CRAN.package.TrenchR
Author: Lauren Buckley ORCID iD [aut, cre], Bryan Briones Ortiz [aut], Isaac Caruso [aut], Aji John ORCID iD [aut], Ofir Levy ORCID iD [aut], Abigail Meyer [aut], Eric Riddell ORCID iD [aut], Yutaro Sakairi [aut], Juniper Simonis ORCID iD [aut], Brian Helmuth ORCID iD [ctb]
Maintainer: Lauren Buckley <lbuckley at uw.edu>
BugReports: https://github.com/trenchproject/TrenchR/issues
License: MIT + file LICENSE
URL: https://trenchproject.github.io/TrenchR/, https://github.com/trenchproject/TrenchR
NeedsCompilation: no
Citation: TrenchR citation info
Materials: README NEWS
CRAN checks: TrenchR results

Documentation:

Reference manual: TrenchR.pdf
Vignettes: Allometries and conversions
Estimating microclimates
List of symbols
Using energy balances to estimate body temperatures

Downloads:

Package source: TrenchR_1.1.1.tar.gz
Windows binaries: r-devel: TrenchR_1.1.1.zip, r-release: TrenchR_1.1.1.zip, r-oldrel: TrenchR_1.1.1.zip
macOS binaries: r-release (arm64): TrenchR_1.1.1.tgz, r-oldrel (arm64): TrenchR_1.1.1.tgz, r-release (x86_64): TrenchR_1.1.1.tgz, r-oldrel (x86_64): TrenchR_1.1.1.tgz
Old sources: TrenchR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=TrenchR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.