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VDJgermlines: Variable, Diversity and Joining Sequences from Various Species

Contains variable, diversity, and joining sequences and accompanying functions that enable both the extraction of and comparison between immune V-D-J genomic segments from a variety of species. Sources include IMGT from MP Lefranc (2009) <doi:10.1093/nar/gkn838> and Vgenerepertoire from publication DN Olivieri (2014) <doi:10.1007/s00251-014-0784-3>.

Version: 0.1
Depends: R (≥ 3.1.0), ape, stringdist
Suggests: knitr, rmarkdown
Published: 2018-12-18
DOI: 10.32614/CRAN.package.VDJgermlines
Author: Alexander Yermanos
Maintainer: Alexander Yermanos <ayermanos at gmail.com>
License: GPL-2
NeedsCompilation: no
CRAN checks: VDJgermlines results

Documentation:

Reference manual: VDJgermlines.pdf

Downloads:

Package source: VDJgermlines_0.1.tar.gz
Windows binaries: r-devel: VDJgermlines_0.1.zip, r-release: VDJgermlines_0.1.zip, r-oldrel: VDJgermlines_0.1.zip
macOS binaries: r-release (arm64): VDJgermlines_0.1.tgz, r-oldrel (arm64): VDJgermlines_0.1.tgz, r-release (x86_64): VDJgermlines_0.1.tgz, r-oldrel (x86_64): VDJgermlines_0.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=VDJgermlines to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.