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Converts pathways from 'WikiPathways' GPML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5) |
| Imports: | graphics, utils, XML, igraph |
| Suggests: | knitr, rmarkdown, Polychrome |
| Published: | 2024-04-10 |
| DOI: | 10.32614/CRAN.package.WayFindR |
| Author: | Kevin R. Coombes [aut, cre], Polina Bombina [aut] |
| Maintainer: | Kevin R. Coombes <krc at silicovore.com> |
| License: | Artistic-2.0 |
| URL: | http://oompa.r-forge.r-project.org/ |
| NeedsCompilation: | no |
| CRAN checks: | WayFindR results |
| Reference manual: | WayFindR.pdf |
| Vignettes: |
WayFindR: Creating Graph Structures From WikiPathways Files WayFindR: Computing Graph Metrics on WikiPathways |
| Package source: | WayFindR_0.1.2.tar.gz |
| Windows binaries: | r-devel: WayFindR_0.1.2.zip, r-release: WayFindR_0.1.2.zip, r-oldrel: WayFindR_0.1.2.zip |
| macOS binaries: | r-release (arm64): WayFindR_0.1.2.tgz, r-oldrel (arm64): WayFindR_0.1.2.tgz, r-release (x86_64): WayFindR_0.1.2.tgz, r-oldrel (x86_64): WayFindR_0.1.2.tgz |
Please use the canonical form https://CRAN.R-project.org/package=WayFindR to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.