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adjustedCurves: Confounder-Adjusted Survival Curves and Cumulative Incidence Functions

Estimate and plot confounder-adjusted survival curves using either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values', various forms of 'Inverse Probability of Treatment Weighting', two forms of 'Augmented Inverse Probability of Treatment Weighting', 'Empirical Likelihood Estimation' or 'Targeted Maximum Likelihood Estimation'. Also includes a significance test for the difference between two adjusted survival curves and the calculation of adjusted restricted mean survival times. Additionally enables the user to estimate and plot cause-specific confounder-adjusted cumulative incidence functions in the competing risks setting using the same methods (with some exceptions). For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.

Version: 0.11.2
Imports: R.utils, doParallel, doRNG, dplyr (≥ 1.0.0), foreach, rlang, survival (≥ 3.0.0)
Suggests: MASS, Matching (≥ 4.9), WeightIt (≥ 0.11.0), cmprsk (≥ 2.2), eventglm (≥ 1.1.1), geepack (≥ 1.3), ggplot2 (≥ 3.4.0), knitr, mice (≥ 3.0.0), nnet, pammtools (≥ 0.5), pec (≥ 2020.11.17), prodlim (≥ 2019.11.13), riskRegression (≥ 2020.12.08), rmarkdown, testthat (≥ 3.2.1), tidyr, ggpp (≥ 0.4.3), vdiffr (≥ 1.0.7), covr, data.table, numDeriv, cowplot (≥ 1.1.3)
Published: 2024-07-29
DOI: 10.32614/CRAN.package.adjustedCurves
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz at rub.de>
Contact: <robin.denz@rub.de>
BugReports: https://github.com/RobinDenz1/adjustedCurves/issues
License: GPL (≥ 3)
URL: https://github.com/RobinDenz1/adjustedCurves, https://robindenz1.github.io/adjustedCurves/
NeedsCompilation: no
Citation: adjustedCurves citation info
Materials: README NEWS
CRAN checks: adjustedCurves results

Documentation:

Reference manual: adjustedCurves.pdf
Vignettes: Comparing Adjusted Survival Curves or Cumulative Incidence Curves
FAQ adjustedCurves
An Introduction to the 'adjustedCurves' Package
Overview of methods in adjustedCurves
Customizing Adjusted Survival Curve Plots

Downloads:

Package source: adjustedCurves_0.11.2.tar.gz
Windows binaries: r-devel: adjustedCurves_0.11.2.zip, r-release: adjustedCurves_0.11.2.zip, r-oldrel: adjustedCurves_0.11.2.zip
macOS binaries: r-release (arm64): adjustedCurves_0.11.2.tgz, r-oldrel (arm64): adjustedCurves_0.11.2.tgz, r-release (x86_64): adjustedCurves_0.11.2.tgz, r-oldrel (x86_64): adjustedCurves_0.11.2.tgz
Old sources: adjustedCurves archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.