The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

allofus: Interface for 'All of Us' Researcher Workbench

Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.

Version: 1.2.0
Depends: R (≥ 2.10)
Imports: cli, tidyr, magrittr, dplyr (≥ 1.1.4), glue, bigrquery (≥ 1.5.1), purrr, stats, utils, dbplyr (≥ 2.5.0), sessioninfo, rlang, stringr, DBI, lifecycle, bit64
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), kableExtra, DT, googlesheets4, tibble, forcats, gh, SqlRender (≥ 1.6.0)
Published: 2024-11-06
DOI: 10.32614/CRAN.package.allofus
Author: Louisa Smith ORCID iD [aut, cph], Rob Cavanaugh ORCID iD [aut, cre, cph]
Maintainer: Rob Cavanaugh <r.cavanaugh at northeastern.edu>
BugReports: https://github.com/roux-ohdsi/allofus/issues
License: MIT + file LICENSE
URL: https://roux-ohdsi.github.io/allofus/, https://github.com/roux-ohdsi/allofus
NeedsCompilation: no
Citation: allofus citation info
Materials: README NEWS
CRAN checks: allofus results

Documentation:

Reference manual: allofus.pdf
Vignettes: All of Us in R (source, R code)
Using ATLAS to create a cohort (source, R code)
Extracting All of Us survey and EHR data (source, R code)
Managing files on the workbench (source, R code)

Downloads:

Package source: allofus_1.2.0.tar.gz
Windows binaries: r-devel: allofus_1.2.0.zip, r-release: allofus_1.2.0.zip, r-oldrel: allofus_1.2.0.zip
macOS binaries: r-release (arm64): allofus_1.2.0.tgz, r-oldrel (arm64): allofus_1.2.0.tgz, r-release (x86_64): allofus_1.2.0.tgz, r-oldrel (x86_64): allofus_1.2.0.tgz
Old sources: allofus archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=allofus to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.