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Streamline use of the 'All of Us' Researcher Workbench (<https://www.researchallofus.org/data-tools/workbench/>)with tools to extract and manipulate data from the 'All of Us' database. Increase interoperability with the Observational Health Data Science and Informatics ('OHDSI') tool stack by decreasing reliance of 'All of Us' tools and allowing for cohort creation via 'Atlas'. Improve reproducible and transparent research using 'All of Us'.
Version: | 1.2.0 |
Depends: | R (≥ 2.10) |
Imports: | cli, tidyr, magrittr, dplyr (≥ 1.1.4), glue, bigrquery (≥ 1.5.1), purrr, stats, utils, dbplyr (≥ 2.5.0), sessioninfo, rlang, stringr, DBI, lifecycle, bit64 |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), kableExtra, DT, googlesheets4, tibble, forcats, gh, SqlRender (≥ 1.6.0) |
Published: | 2024-11-06 |
DOI: | 10.32614/CRAN.package.allofus |
Author: | Louisa Smith [aut, cph], Rob Cavanaugh [aut, cre, cph] |
Maintainer: | Rob Cavanaugh <r.cavanaugh at northeastern.edu> |
BugReports: | https://github.com/roux-ohdsi/allofus/issues |
License: | MIT + file LICENSE |
URL: | https://roux-ohdsi.github.io/allofus/, https://github.com/roux-ohdsi/allofus |
NeedsCompilation: | no |
Citation: | allofus citation info |
Materials: | README NEWS |
CRAN checks: | allofus results |
Reference manual: | allofus.pdf |
Vignettes: |
All of Us in R (source, R code) Using ATLAS to create a cohort (source, R code) Extracting All of Us survey and EHR data (source, R code) Managing files on the workbench (source, R code) |
Package source: | allofus_1.2.0.tar.gz |
Windows binaries: | r-devel: allofus_1.2.0.zip, r-release: allofus_1.2.0.zip, r-oldrel: allofus_1.2.0.zip |
macOS binaries: | r-release (arm64): allofus_1.2.0.tgz, r-oldrel (arm64): allofus_1.2.0.tgz, r-release (x86_64): allofus_1.2.0.tgz, r-oldrel (x86_64): allofus_1.2.0.tgz |
Old sources: | allofus archive |
Please use the canonical form https://CRAN.R-project.org/package=allofus to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.