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banffIT: Automatize Diagnosis Standardized Assignation Using the Banff Classification

Assigns standardized diagnoses using the Banff Classification (Category 1 to 6 diagnoses, including Acute and Chronic active T-cell mediated rejection as well as Active, Chronic active, and Chronic antibody mediated rejection). The main function considers a minimal dataset containing biopsies information in a specific format (described by a data dictionary), verifies its content and format (based on the data dictionary), assigns diagnoses, and creates a summary report. The package is developed on the reference guide to the Banff classification of renal allograft pathology Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>. The full description of the Banff classification is available at <https://banfffoundation.org/>.

Version: 1.0.0
Depends: R (≥ 3.4)
Imports: dplyr (≥ 1.1.0), rlang, tools, utils, crayon, stringr, fs, lubridate, tidyr, fabR, madshapR
Suggests: knitr, rmarkdown, usethis
Published: 2024-05-08
DOI: 10.32614/CRAN.package.banffIT
Author: Guillaume Fabre ORCID iD [aut, cre], Ruth Sapir-Pichhadze [fnd, cph, ctb], Samuel El Bouzaïdi Tiali [ctb], Jérôme Laforme [ctb], Tina Wey [ctb]
Maintainer: Guillaume Fabre <guijoseph.fabre at gmail.com>
BugReports: https://github.com/PersonalizedTransplantCare/banffIT/issues
License: GPL-3
URL: https://github.com/PersonalizedTransplantCare/banffIT
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: banffIT results

Documentation:

Reference manual: banffIT.pdf
Vignettes: banffIT-vignette

Downloads:

Package source: banffIT_1.0.0.tar.gz
Windows binaries: r-devel: banffIT_1.0.0.zip, r-release: banffIT_1.0.0.zip, r-oldrel: banffIT_1.0.0.zip
macOS binaries: r-release (arm64): banffIT_1.0.0.tgz, r-oldrel (arm64): banffIT_1.0.0.tgz, r-release (x86_64): banffIT_1.0.0.tgz, r-oldrel (x86_64): banffIT_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=banffIT to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.