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Functions for species distribution modeling, calibration and evaluation, ensemble of models, ensemble forecasting and visualization. The package permits to run consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences) dataset and to combine them in ensemble models and ensemble projections. Some bench of other evaluation and visualisation tools are also available within the package.
| Version: | 4.2-5-2 |
| Depends: | R (≥ 4.1) |
| Imports: | stats, utils, methods, terra (≥ 1.6-33), sp, reshape, reshape2, abind, foreach, ggplot2, gbm (≥ 2.1.3), rpart, MASS, pROC (≥ 1.15.0), PresenceAbsence, dplyr |
| Suggests: | Hmisc, gam, mgcv, earth, maxnet, mda, nnet, randomForest, xgboost, car, caret, dismo, ENMeval, doParallel, raster, ggpubr, testthat, knitr, markdown, tidyterra, ggtext |
| Published: | 2024-06-14 |
| DOI: | 10.32614/CRAN.package.biomod2 |
| Author: | Wilfried Thuiller [aut], Damien Georges [aut], Maya Gueguen [aut, cre], Robin Engler [aut], Frank Breiner [aut], Bruno Lafourcade [aut], Remi Patin [aut], Helene Blancheteau [aut] |
| Maintainer: | Maya Gueguen <maya.gueguen at univ-grenoble-alpes.fr> |
| Contact: | Wilfried Thuiller <wilfried.thuiller@univ-grenoble-alpes.fr>, Maya Gueguen <maya.gueguen@univ-grenoble-alpes.fr>, Helene Blancheteau <helene.blancheteau@univ-grenoble-alpes.fr> |
| BugReports: | https://github.com/biomodhub/biomod2/issues |
| License: | GPL-3 |
| URL: | https://biomodhub.github.io/biomod2/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | biomod2 results |
| Reference manual: | biomod2.pdf |
| Vignettes: |
Main functions Secundary functions News Cross-validation Data preparation Modeling Options Presentation Pseudo-absences Variability in results Videos |
| Package source: | biomod2_4.2-5-2.tar.gz |
| Windows binaries: | r-devel: biomod2_4.2-5-2.zip, r-release: biomod2_4.2-5-2.zip, r-oldrel: biomod2_4.2-5-2.zip |
| macOS binaries: | r-release (arm64): biomod2_4.2-5-2.tgz, r-oldrel (arm64): biomod2_4.2-5-2.tgz, r-release (x86_64): biomod2_4.2-5-2.tgz, r-oldrel (x86_64): biomod2_4.2-5-2.tgz |
| Old sources: | biomod2 archive |
| Reverse imports: | ecospat, gecko, spm |
| Reverse suggests: | blockCV |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.