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crosshap: Local Haplotype Clustering and Visualization
A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.
| Version: |
1.4.0 |
| Depends: |
R (≥ 4.00) |
| Imports: |
cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2, ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales, tibble, tidyr |
| Suggests: |
covr, knitr, rmarkdown, testthat (≥ 3.0.0), umap, vdiffr |
| Published: |
2024-03-31 |
| DOI: |
10.32614/CRAN.package.crosshap |
| Author: |
Jacob Marsh  [aut,
cre],
Brady Johnston
[aut],
Jakob Petereit
[aut] |
| Maintainer: |
Jacob Marsh <jake.marsh at live.com.au> |
| BugReports: |
https://github.com/jacobimarsh/crosshap/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://jacobimarsh.github.io/crosshap/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
crosshap results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=crosshap
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.