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eSIR: Extended State-Space SIR Models

An implementation of extended state-space SIR models developed by Song Lab at UM school of Public Health. There are several functions available by 1) including a time-varying transmission modifier, 2) adding a time-dependent quarantine compartment, 3) adding a time-dependent antibody-immunization compartment. Wang L. (2020) <doi:10.6339/JDS.202007_18(3).0003>.

Version: 0.4.2
Depends: R (≥ 3.5.2)
Imports: coda (≥ 0.19.3), chron (≥ 2.3.54), data.table (≥ 1.12.0), ggplot2 (≥ 3.2.1), grDevices (≥ 3.5.2), graphics (≥ 3.5.2), gtools (≥ 3.8.1), scales (≥ 1.1.0), stats (≥ 3.5.2), reshape2 (≥ 1.4.3), rjags (≥ 4.10), utils (≥ 3.5.2)
Suggests: testthat (≥ 3.0.0)
Published: 2021-12-10
DOI: 10.32614/CRAN.package.eSIR
Author: Lili Wang [aut], Song Lab [aut] (<http://websites.umich.edu/~songlab/>), Paul Egeler [ctb] (Spectrum Health Office of Research and Education), Michael Kleinsasser [cre]
Maintainer: Michael Kleinsasser <biostat-cran-manager at umich.edu>
License: CC BY 4.0
NeedsCompilation: no
Materials: README
CRAN checks: eSIR results

Documentation:

Reference manual: eSIR.pdf

Downloads:

Package source: eSIR_0.4.2.tar.gz
Windows binaries: r-devel: eSIR_0.4.2.zip, r-release: eSIR_0.4.2.zip, r-oldrel: eSIR_0.4.2.zip
macOS binaries: r-release (arm64): eSIR_0.4.2.tgz, r-oldrel (arm64): eSIR_0.4.2.tgz, r-release (x86_64): eSIR_0.4.2.tgz, r-oldrel (x86_64): eSIR_0.4.2.tgz
Old sources: eSIR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=eSIR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.