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Creates ensemble taxonomic assignments of amplicon sequencing data in R using outputs of multiple taxonomic assignment algorithms and/or reference databases. Includes flexible algorithms for mapping taxonomic nomenclatures onto one another and for computing ensemble taxonomic assignments.
| Version: | 1.1.1 |
| Depends: | R (≥ 2.10) |
| Imports: | dplyr, Biostrings, DECIPHER, stringr, ggplot2, reshape2, usethis |
| Suggests: | knitr, rmarkdown, markdown |
| Published: | 2021-05-21 |
| DOI: | 10.32614/CRAN.package.ensembleTax |
| Author: | Dylan Catlett [aut, cre], Kevin Son [ctb], Connie Liang [ctb] |
| Maintainer: | Dylan Catlett <dcat4444 at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | ensembleTax results |
| Reference manual: | ensembleTax.pdf |
| Vignettes: |
assign.ensembleTax tutorial ensembleTax package vignette taxmapper tutorial |
| Package source: | ensembleTax_1.1.1.tar.gz |
| Windows binaries: | r-devel: ensembleTax_1.1.1.zip, r-release: ensembleTax_1.1.1.zip, r-oldrel: ensembleTax_1.1.1.zip |
| macOS binaries: | r-release (arm64): ensembleTax_1.1.1.tgz, r-oldrel (arm64): ensembleTax_1.1.1.tgz, r-release (x86_64): ensembleTax_1.1.1.tgz, r-oldrel (x86_64): ensembleTax_1.1.1.tgz |
| Old sources: | ensembleTax archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.