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Provides tools for plotting gene clusters and transcripts by importing data from GenBank, FASTA, and GFF files. It performs BLASTP and MUMmer alignments [Altschul et al. (1990) <doi:10.1016/S0022-2836(05)80360-2>; Delcher et al. (1999) <doi:10.1093/nar/27.11.2369>] and displays results on gene arrow maps. Extensive customization options are available, including legends, labels, annotations, scales, colors, tooltips, and more.
| Version: | 0.1.10 |
| Depends: | R (≥ 3.5.0) |
| Imports: | htmlwidgets, fontawesome, magrittr, dplyr, tidyr, rlang |
| Suggests: | knitr, rmarkdown, shiny, biomaRt, pwalign, Biostrings, testthat (≥ 3.0.0) |
| Published: | 2025-01-10 |
| DOI: | 10.32614/CRAN.package.geneviewer |
| Author: | Niels van der Velden [aut, cre] |
| Maintainer: | Niels van der Velden <n.s.j.vandervelden at gmail.com> |
| BugReports: | https://github.com/nvelden/geneviewer/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/nvelden/geneviewer |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | geneviewer results |
| Reference manual: | geneviewer.pdf |
| Package source: | geneviewer_0.1.10.tar.gz |
| Windows binaries: | r-devel: geneviewer_0.1.10.zip, r-release: geneviewer_0.1.10.zip, r-oldrel: geneviewer_0.1.10.zip |
| macOS binaries: | r-release (arm64): geneviewer_0.1.10.tgz, r-oldrel (arm64): geneviewer_0.1.10.tgz, r-release (x86_64): geneviewer_0.1.10.tgz, r-oldrel (x86_64): geneviewer_0.1.10.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.