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glyparse: Parsing Glycan Structure Text Representations

Provides functions to parse glycan structure text representations into 'glyrepr' glycan structures. Currently, it supports StrucGP-style, pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, WURCS, Linear Code, and GlycoCT format. It also provides an automatic parser to detect the format and parse the structure string.

Version: 0.5.3
Depends: R (≥ 4.1)
Imports: checkmate, cli, dplyr, glyrepr (≥ 0.7.0), igraph, purrr, rlang, rstackdeque, stringr
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2025-11-04
DOI: 10.32614/CRAN.package.glyparse
Author: Bin Fu ORCID iD [aut, cre, cph]
Maintainer: Bin Fu <23110220018 at m.fudan.edu.cn>
BugReports: https://github.com/glycoverse/glyparse/issues
License: MIT + file LICENSE
URL: https://glycoverse.github.io/glyparse/, https://github.com/glycoverse/glyparse
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: glyparse results

Documentation:

Reference manual: glyparse.html , glyparse.pdf
Vignettes: Getting Started with glyparse (source, R code)

Downloads:

Package source: glyparse_0.5.3.tar.gz
Windows binaries: r-devel: glyparse_0.5.3.zip, r-release: glyparse_0.5.3.zip, r-oldrel: glyparse_0.5.3.zip
macOS binaries: r-release (arm64): glyparse_0.5.3.tgz, r-oldrel (arm64): glyparse_0.5.3.tgz, r-release (x86_64): glyparse_0.5.3.tgz, r-oldrel (x86_64): glyparse_0.5.3.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=glyparse to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.