goat: Gene Set Analysis Using the Gene Set Ordinal Association Test
Perform gene set enrichment analyses using the Gene set Ordinal Association Test (GOAT) algorithm and visualize your results. Koopmans, F. (2024) <doi:10.1101/2023.12.10.570979>.
| Version: | 1.0 |
| Depends: | R (≥ 4.1.0), dplyr (≥ 1.0.3) |
| Imports: | tibble (≥ 3.0.0), tidyselect (≥ 1.2.0), tidyr (≥ 1.1.2), data.table (≥ 1.14.0), Matrix (≥ 1.4-0), readxl (≥ 1.4.1), writexl (≥ 1.4.1), Rcpp (≥ 1.0.9), vctrs (≥ 0.3.8), MonoPoly (≥ 0.3-10), ggplot2 (≥ 3.3.0), pheatmap (≥ 1.0.8), treemap (≥ 2.4), igraph (≥ 1.2.5), ggraph (≥ 2.0.0) |
| LinkingTo: | Rcpp |
| Suggests: | AnnotationDbi, GO.db, org.Hs.eg.db, fgsea, testthat (≥ 3.0.0) |
| Published: | 2024-04-30 |
| Author: | Frank Koopmans 
[aut, cre] |
| Maintainer: | Frank Koopmans <ftwkoopmans at gmail.com> |
| License: | Apache License (≥ 2) |
| URL: | https://github.com/ftwkoopmans/goat/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | goat citation info |
| Materials: | README NEWS |
| CRAN checks: | goat results |
Documentation:
| Reference manual: | goat.pdf |
Downloads:
| Package source: | goat_1.0.tar.gz |
| Windows binaries: | r-devel: goat_1.0.zip, r-release: not available, r-oldrel: goat_1.0.zip |
| macOS binaries: | r-release (arm64): goat_1.0.tgz, r-oldrel (arm64): goat_1.0.tgz, r-release (x86_64): goat_1.0.tgz, r-oldrel (x86_64): goat_1.0.tgz |
Linking:
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