gpmapr: Query the 'OpenGWAS' Genotype-Phenotype Map
Client for the 'OpenGWAS' genotype-phenotype map ('GPMap') API <https://gpmap.opengwas.io>, which brings together colocalisation, rare variant and molecular QTL results across thousands of traits. Functions retrieve traits, genes, variants and genomic regions with their colocalising studies, associations, linkage disequilibrium and pleiotropy summaries, search the map by name or variant, and upload GWAS summary statistics for analysis against it.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | dplyr, httr, jsonlite, readr, stats, utils |
| Suggests: | ggplot2, ggrepel, knitr, RColorBrewer, reshape2, rmarkdown, stringr, testthat (≥ 3.1.7), tidyr |
| Published: | 2026-11-07 |
| DOI: | 10.32614/CRAN.package.gpmapr |
| Author: | Andrew Elmore 
[aut, cre],
Gibran Hemani
[aut] |
| Maintainer: | Andrew Elmore <andrew.elmore at bristol.ac.uk> |
| BugReports: | https://github.com/MRCIEU/gpmapr/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/MRCIEU/gpmapr, https://gpmap.opengwas.io |
| NeedsCompilation: | no |
| Citation: | gpmapr citation info |
| Materials: | README, NEWS |
| CRAN checks: | gpmapr results |
Documentation:
| Reference manual: | gpmapr.html , gpmapr.pdf |
| Vignettes: |
Getting started with gpmapr (source) GPMap tutorial: Haemoglobin concentration case study (source) GPMap tutorial: GWAS upload (source) |
Downloads:
| Package source: | gpmapr_1.0.0.tar.gz |
| Windows binaries: | r-devel: gpmapr_1.0.0.zip, r-release: gpmapr_1.0.0.zip, r-oldrel: not available |
| macOS binaries: | r-release (arm64): gpmapr_1.0.0.tgz, r-oldrel (arm64): gpmapr_1.0.0.tgz, r-release (x86_64): gpmapr_1.0.0.tgz, r-oldrel (x86_64): gpmapr_1.0.0.tgz |
Linking:
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