hdbayes: Bayesian Analysis of Generalized Linear Models with Historical Data

User-friendly functions for leveraging (multiple) historical data set(s) for generalized linear models. The package contains functions for sampling from the posterior distribution of a generalized linear model using the prior induced by the Bayesian hierarchical model, power prior by Ibrahim and Chen (2000) <doi:10.1214/ss/1009212673>, normalized power prior by Duan et al. (2006) <doi:10.1002/env.752>, normalized asymptotic power prior by Ibrahim et al. (2015) <doi:10.1002/sim.6728>, commensurate prior by Hobbs et al. (2011) <doi:10.1111/j.1541-0420.2011.01564.x>, robust meta-analytic-predictive prior by Schmidli et al. (2014) <doi:10.1111/biom.12242>, the latent exchangeability prior by Alt et al. (2023) <doi:10.48550/arXiv.2303.05223>, and a normal (or half-normal) prior. Functions for computing the marginal log-likelihood under each of the implemented priors are also included. The package compiles all the 'CmdStan' models once during installation using the 'instantiate' package.

Version:	0.1.1
Depends:	R (≥ 4.2.0)
Imports:	instantiate (≥ 0.1.0), callr, fs, formula.tools, stats, posterior, enrichwith, mclust, bridgesampling, mvtnorm
Suggests:	cmdstanr (≥ 0.6.0), ggplot2, knitr, parallel, rmarkdown, tibble, dplyr
Published:	2024-08-22
DOI:	10.32614/CRAN.package.hdbayes
Author:	Ethan M. Alt [aut, cre, cph], Xinxin Chen [aut], Luiz M. Carvalho [aut], Joseph G. Ibrahim [aut], Xiuya Chang [ctb]
Maintainer:	Ethan M. Alt <ethanalt at live.unc.edu>
BugReports:	https://github.com/ethan-alt/hdbayes/issues
License:	MIT + file LICENSE
URL:	https://github.com/ethan-alt/hdbayes
NeedsCompilation:	yes
SystemRequirements:	CmdStan (https://mc-stan.org/users/interfaces/cmdstan)
Additional_repositories:	https://mc-stan.org/r-packages/
Materials:	NEWS
CRAN checks:	hdbayes results

Documentation:

Reference manual:	hdbayes.pdf
Vignettes:	AIDS-Progression (source)

Downloads:

Package source:	hdbayes_0.1.1.tar.gz
Windows binaries:	r-devel: hdbayes_0.1.1.zip, r-release: hdbayes_0.1.1.zip, r-oldrel: hdbayes_0.1.1.zip
macOS binaries:	r-release (arm64): hdbayes_0.1.1.tgz, r-oldrel (arm64): hdbayes_0.1.1.tgz, r-release (x86_64): hdbayes_0.1.1.tgz, r-oldrel (x86_64): hdbayes_0.1.1.tgz
Old sources:	hdbayes archive

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